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Contents of README:CEAS: Cis-regulatory Element Annotation System This is a tool designed to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq of both sharp and broad binding factors. As a stand-alone extension of our web application CEAS, it provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor. CEAS also enables biologists to visualize the average ChIP enrichment signals over specific genomic features, allowing continuous and broad ChIP enrichment to be perceived which might be too subtle to detect from ChIP peaks alone. A recommended package to install is R. |
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Parent Directory - README 14-Dec-2013 18:05 729 References 14-Dec-2013 18:05 117 cistrome-CEAS.SlackBuild 14-Dec-2013 18:05 2.8K cistrome-CEAS.info 14-Dec-2013 18:05 317 slack-desc 14-Dec-2013 18:05 967
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